Citing GEMmaker

If you use GEMmaker in your research, please cite this publication:

Hadish, J. A., Biggs, T. D., Shealy, B. T., Bender, M. R., McKnight, C. B., Wytko, C., Smith, M. C., Feltus, F. A., Honaas, L., & Ficklin, S. P. (2022). GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure. BMC Bioinformatics, 23(1), 1–11.

Publiations Citing GEMmaker

The following publications report use of GEMmaker:

• McGowan MT, Zhang Z, Ficklin SP. Chromosomal characteristics of salt stress heritable gene expression in the rice genome. BMC Genomic Data 2021; 22:4.
• Ogle C, Reddick D, McKnight C, et al. Named Data Networking for Genomics Data Management and Integrated Workflows. Front. Big Data 2021; 4:15.
• Shealy BT, Feltus FA, Smith MC. Intelligent Resource Provisioning for Scientific Workflows and HPC. 2021 IEEE Work. Work. Support Large-Scale Sci. 2021; 9–16
• McConnel C, Crisp S, Biggs T, et al. Transcriptomic analysis of peripheral leukocytes in dairy cows with and without evidence of metritis and associated early postpartum disease. Appl. Anim. Sci. 2020; 36:784–7982.
• McKnight CB, Poulos AL, Bender MR, et al. Exploring Lossy Compression of Gene Expression Matrices. 2019 IEEE/ACM 5th Int. Work. Data Anal. Reduct. Big Sci. Data 2019; 28–343.